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	<title>TinySci &#187; Biology</title>
	<atom:link href="http://www.tinysci.com/category/pure-science/biology/feed/" rel="self" type="application/rss+xml" />
	<link>http://www.tinysci.com</link>
	<description>Snippets of Summarized Science</description>
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		<title>Science Headlines for Week 1 of December 2009</title>
		<link>http://www.tinysci.com/2009/12/06/science-headlines-for-week-1-of-december-2009/</link>
		<comments>http://www.tinysci.com/2009/12/06/science-headlines-for-week-1-of-december-2009/#comments</comments>
		<pubDate>Sun, 06 Dec 2009 23:43:14 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=504</guid>
		<description><![CDATA[Ok, what&#8217;s with the new science-blog format? Honestly, the day job has been very busy, something had to give, and lately that has meant fewer science posts.  But, in an effort to stay current, we&#8217;re going to try something new: Very condensed posts about more things we find very interesting provided a little less often. [...]]]></description>
			<content:encoded><![CDATA[<h2>Ok, what&#8217;s with the new science-blog format?</h2>
<p>Honestly, the day job has been very busy, something had to give, and lately that has meant fewer science posts.  But, in an effort to stay current, we&#8217;re going to try something new: Very condensed posts about more things we find very interesting provided a little less often.  Hopefully, at least weekly.  We&#8217;ll see if this works.  And in the mean time let us know what you think.  The best way is to send a tweet to: <a title="Tweet Dave Oei" href="http://twitter.com/daveoei" target="_blank">@daveoei</a> or post a comment on the site.  Enjoy!</p>
<h2>Earth</h2>
<ul>
<li>As stolen emails makes headlines, the <a title="Climategate at Scientific American" href="http://www.scientificamerican.com/article.cfm?id=scientists-respond-to-climategate-controversy" target="_blank">climate continues to warm</a>.  <em>Scientific American</em></li>
<li>Is that a <a href="http://www.pasadenastarnews.com/rds_search/ci_13846139" target="_blank">seismometers in your pocket</a> or are you just glad to see me?  Caltech via <em>Pasadena News</em></li>
<li>Acidification of ocean waters from <a title="C02 and shells" href="http://www.whoi.edu/page.do?pid=7545&amp;tid=282&amp;cid=63809&amp;ct=162" target="_blank">high CO2 levels may yield larger shells</a> and thus not necessarily spell doom-and-gloom for all shelled creatures, though, it is certainly bad for some.  <em>Woods Hole Oceanographic Institute</em></li>
</ul>
<h2>Space</h2>
<ul>
<li>A good guide to <a title="Beginning astrophotography" href="http://www.space.com/spacewatch/091204-astrophotography-guide.html" target="_blank">beginning astrophotography</a>. <em>Space.com</em></li>
<li>A more advanced astrophotography guide, this is a <a title="The Backyard Astronomer's Guide" href="http://www.amazon.com/Backyard-Astronomers-Guide-Terence-Dickinson/dp/1554073448/ref=sr_1_13?ie=UTF8&amp;s=books&amp;qid=1260140751&amp;sr=8-13" target="_blank">newer edition</a> to the one I currently have. <em>Amazon.com</em></li>
<li>Not sure if this is the largest picture ever, but <a title="Large Galactic Photo by Spitzer" href="http://www.jpl.nasa.gov/news/features.cfm?feature=2388&amp;rn=news.xml&amp;rst=2388" target="_blank">800,000 digital photos stitched together</a> form a 120 ft long view of just 50% of our galaxy. <em>NASA JPL</em></li>
<li><a title="Solar tsunami" href="http://science.nasa.gov/headlines/y2009/24nov_solartsunami.htm" target="_blank">Solar tsunam</a>i.  What could go wrong?  <em>NASA</em></li>
</ul>
<h2>Health</h2>
<ul>
<li><em><span style="font-style: normal;"><a title="Math to predict body weight" href="http://focus.hms.harvard.edu/2009/010909/metabolism.shtml" target="_blank">New mathematical model</a> points to at least two stable weights per individual, does not offer suggestion on hitting the lower of the two. </span>Harvard</em></li>
<li>Very early intervention certainly isn&#8217;t a cure for autism, but the apparent marked effectiveness of <a title="Autism therapies start t 18 months" href="http://uwnews.org/article.asp?articleid=53914" target="_blank">therapies starting at 18 months</a> certainly makes the effort worthwhile.  <em>University of Washington</em></li>
</ul>
<p><em><br />
</em></p>
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		<title>6 Great Pictures from Shuttle Mission STS-119</title>
		<link>http://www.tinysci.com/2009/04/03/6-great-pictures-from-shuttle-mission-sts-119/</link>
		<comments>http://www.tinysci.com/2009/04/03/6-great-pictures-from-shuttle-mission-sts-119/#comments</comments>
		<pubDate>Fri, 03 Apr 2009 20:41:44 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=442</guid>
		<description><![CDATA[If you know where to look, you can find a treasure trove of great pictures from each and every NASA mission, including, of course, those of the Space Shuttle.  It&#8217;s not easy though, that despite the improved look-and-feel of NASA&#8217;s website.  But if you&#8217;re interested in shuttle-specific images, here&#8217;s a good jumping off page. Getting [...]]]></description>
			<content:encoded><![CDATA[<p>If you know where to look, you can find a treasure trove of great pictures from each and every NASA mission, including, of course, those of the Space Shuttle.  It&#8217;s not easy though, that despite the improved look-and-feel of NASA&#8217;s <a href="http://www.nasa.gov" target="_blank">website</a>.  But if you&#8217;re interested in shuttle-specific images, <a title="Space Shuttle Multimedia" href="http://www.nasa.gov/mission_pages/shuttle/multimedia/index.html" target="_blank">here&#8217;s a good jumping off page</a>.</p>
<p>Getting back, here are some of the best images of the just-completed mission STS-119.  You won&#8217;t find any of astronauts with frizzy hair, or astronauts in gravity-defying poses (that&#8217;s so 1990).  You will find juxtapositions of Earth, with the ISS, astronauts on EVA, and of course, the shuttle.</p>
<p>Here are the pictures, enjoy, and a word of warning &#8211; they&#8217;re quite large!</p>

<a href='http://www.tinysci.com/2009/04/03/6-great-pictures-from-shuttle-mission-sts-119/321269main_iss018e042056_hires/' title='STS-119, Shuttle Docking with International Space Station'><img width="240" height="163" src="http://www.tinysci.com/images/321269main_iss018e042056_hires-240x163.jpg" class="attachment-thumbnail" alt="STS-119, Shuttle Docking with International Space Station" title="STS-119, Shuttle Docking with International Space Station" /></a>
<a href='http://www.tinysci.com/2009/04/03/6-great-pictures-from-shuttle-mission-sts-119/321667main_s119e007123_hires/' title='STS-119, Astronaut out on a Truss'><img width="240" height="163" src="http://www.tinysci.com/images/321667main_s119e007123_hires-240x163.jpg" class="attachment-thumbnail" alt="STS-119, Astronaut out on a Truss" title="STS-119, Astronaut out on a Truss" /></a>
<a href='http://www.tinysci.com/2009/04/03/6-great-pictures-from-shuttle-mission-sts-119/321738main_s119e007278_hires/' title='STS-119, More Truss Work'><img width="240" height="163" src="http://www.tinysci.com/images/321738main_s119e007278_hires-240x163.jpg" class="attachment-thumbnail" alt="STS-119, More Truss Work" title="STS-119, More Truss Work" /></a>
<a href='http://www.tinysci.com/2009/04/03/6-great-pictures-from-shuttle-mission-sts-119/322189main_iss018e042502_hires/' title='STS-119, Astronaut, the ISS, the Shuttle, and Earth'><img width="240" height="163" src="http://www.tinysci.com/images/322189main_iss018e042502_hires-240x163.jpg" class="attachment-thumbnail" alt="STS-119, Astronaut, the ISS, the Shuttle, and Earth" title="STS-119, Astronaut, the ISS, the Shuttle, and Earth" /></a>
<a href='http://www.tinysci.com/2009/04/03/6-great-pictures-from-shuttle-mission-sts-119/322300main_s119e007519_hires/' title='STS-119, Even more truss work!'><img width="240" height="163" src="http://www.tinysci.com/images/322300main_s119e007519_hires-240x163.jpg" class="attachment-thumbnail" alt="STS-119, Even more truss work!" title="STS-119, Even more truss work!" /></a>
<a href='http://www.tinysci.com/2009/04/03/6-great-pictures-from-shuttle-mission-sts-119/323162main_s119e010500_hires/' title='STS-119, Her Solar Panels Unfurled, the ISS at Dawn'><img width="240" height="163" src="http://www.tinysci.com/images/323162main_s119e010500_hires-240x163.jpg" class="attachment-thumbnail" alt="STS-119, Her Solar Panels Unfurled, the ISS at Dawn" title="STS-119, Her Solar Panels Unfurled, the ISS at Dawn" /></a>

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		<title>How Udderly Odd &#8211; Cows with Built-in Magnets Confirmed?</title>
		<link>http://www.tinysci.com/2009/03/17/how-udderly-odd-cows-with-built-in-magnets-confirmed/</link>
		<comments>http://www.tinysci.com/2009/03/17/how-udderly-odd-cows-with-built-in-magnets-confirmed/#comments</comments>
		<pubDate>Tue, 17 Mar 2009 07:02:17 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=430</guid>
		<description><![CDATA[Last year, after looking at over 8000 images of domestic cattle on Google Earth, a group of scientists led by Hynek Burda and Sabine Begall found that something interesting: Cows tended to align their bodies north-south. While the reason for why cows did this was elusive, the methodology they used was such that anybody with [...]]]></description>
			<content:encoded><![CDATA[<div id="attachment_433" class="wp-caption alignnone" style="width: 600px"><a href="http://www.tinysci.com/images/cows.jpg"><img class="size-medium wp-image-433" title="How Udderly Odd - Cows with Built-in Magnets Confirmed?" src="http://www.tinysci.com/images/cows-590x292.jpg" alt="Cows on Microsoft Live" width="590" height="292" /></a><p class="wp-caption-text">How Udderly Odd - Cows with Built-in Magnets Confirmed?</p></div>
<p>Last year, after looking at over 8000 images of domestic cattle on Google Earth, a group of scientists led by Hynek Burda and Sabine Begall found that something interesting: Cows tended to align their bodies north-south.</p>
<p>While the reason for why cows did this was elusive, the methodology they used was such that anybody with a computer and internet access could have reached the same results.</p>
<p>Google Earth, a monster of a program, is a free one by Google that provides detailed satellite images, topographic maps, etc&#8230; of our planet.  These researchers simply looked at a lot of cows spread across Earth and made this simple discovery.  But was this cause of this mystery-behavior the work of magnetism or the sun?  The researchers suggested it was magnetism because cows were seen pointing north-south even in cloudy conditions.</p>
<p>But there was one way to find out definitively.</p>
<p>Enter Google Earth again.  Except this time, they focused on cows&#8230;under high-powered electrical lines.</p>
<p>Contrary to popular belief, the Earth&#8217;s magnetic field is very weak, measuring in at no more than 60 microteslas.  Just for reference, a typical refrigerator magnet pulls in at about 5,000 microteslas.  Which means that electrical lines, despite being some distance off the ground from these cows could still provide enough of a disruption to Earth&#8217;s magnetic field to confuse cows.</p>
<p>And confuse cows they did.  The researchers found that cows under electrical lines were oriented randomly, not in neat north-south orientations.</p>
<p>Of course, none of this explains the picture I provided above.  It&#8217;s not from Google Earth, but from Microsoft Live.  It&#8217;s a picture of cows from the Netherlands, which if correctly depicted, shows them oriented more east-west (see the link below if you don&#8217;t believe me).  None, in fact, are oriented north-south.</p>
<p>Perhaps it&#8217;s just another example of things being done a little differently over in Holland.  Or maybe there are underground wires that are interfering with these cow&#8217;s internal compass. Regardless, for now go ahead and put me on the skeptical but highly amused side.</p>
<p>Image source: <a title="Live Cows" href="http://maps.live.com/default.aspx?v=2&amp;FORM=LMLTCP&amp;cp=srd8vjhdgm3r&amp;style=o&amp;lvl=2&amp;tilt=-90&amp;dir=0&amp;alt=-1000&amp;scene=40678467&amp;phx=0&amp;phy=0&amp;phscl=1&amp;encType=1" target="_blank">Live.com</a></p>
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		<title>Tigers, Whole Foods, Global Warming &amp; Orangutans.  What&#8217;s the Link?</title>
		<link>http://www.tinysci.com/2009/03/01/tigers-whole-foods-global-warming-orangutans-whats-the-link/</link>
		<comments>http://www.tinysci.com/2009/03/01/tigers-whole-foods-global-warming-orangutans-whats-the-link/#comments</comments>
		<pubDate>Mon, 02 Mar 2009 00:33:26 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Business and Politics]]></category>
		<category><![CDATA[Featured Articles]]></category>
		<category><![CDATA[Global Science]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=395</guid>
		<description><![CDATA[Palm oil. Palm what? If you pay as little attention to your food as I do then you&#8217;re probably just as surprised as I am that: 1) Some palm trees make edible fruit; and 2) Some of this fruit is linked to endangered species destruction and deforestation. It so happens that for the last 50 [...]]]></description>
			<content:encoded><![CDATA[<div id="attachment_405" class="wp-caption alignleft" style="width: 600px"><img class="size-medium wp-image-405" title="Whole Foods, Tigers, Global Warming &amp; Orangutans. What’s the Link?" src="http://www.tinysci.com/images/harapan_sumatran_tiger-590x436.jpg" alt="Whole Foods, Tigers, Global Warming &amp; Orangutans. What’s the Link?  Photo by Dave Watts of Birdlife International." width="590" height="436" /><p class="wp-caption-text">Tigers, Whole Foods, Global Warming &amp; Orangutans.  What&#39;s the Link? Photo by Dave Watts.</p></div>
<p>Palm oil.</p>
<p>Palm <em>what</em>?</p>
<p>If you pay as little attention to your food as I do then you&#8217;re probably just as surprised as I am that: 1) Some palm trees make edible fruit; and 2) Some of this fruit is linked to endangered species destruction and deforestation.</p>
<p>It so happens that for the last 50 years or so, palm oil has been making head-ways into the foods we eat.  It&#8217;s also in bio-fuels we burn and cosmetics some of you may use.  Recently, there&#8217;s been a huge push for the introduction of palm oil in U.S. foods because of new trans-fat reporting requirements.  Because palm oil doesn&#8217;t have any, it&#8217;s been used as a choice to replace non-trans-fat-free shortening.</p>
<p>And while we are collectively healthier for eating less trans-fat, there are measurable global consequences that have resulted from this relatively tiny shift in our dietary habits.  Namely, deforestation on a vast scale and threatened species nearing extinction.</p>
<p><span id="more-395"></span></p>
<p>Much of this palm oil is grown in Indonesia and Malaysia.  According to the <a title="Palm Oil and Tigers" href="http://www.google.com/hostednews/ap/article/ALeqM5jrBIteP6Y1Mrs85wmCSjRx5wI7OwD96LE2A00" target="_blank">Associated Press</a>, the amount of deforestation needed to accommodate the growth in palm oil plantations is on the order of 670,000 acres every year.  Or, to put that into perspective, it&#8217;s an area of forest that&#8217;s cleared and replaced with palms that&#8217;s greater in size than the cities of Los Angeles and New York (including all 5 boroughs) combined.  Every year.</p>
<p>That&#8217;s a lot.</p>
<p>As a result of the forest clearing, there have been increasing incidents of <a title="Tigers and Loggers" href="http://www.watoday.com.au/world/big-cats-attack-as-illegal-loggers-take-their-space-20090301-8lg0.html" target="_blank">sumatran tiger incursions</a> with forest villagers, and consequently, deaths on both sides.  Naturally that&#8217;s very unfortunate both ways, but considering there are likely less than 1000 of these tigers left, it&#8217;s easier to feel sorry for the tigers.  But considering the high rate of poverty in Indonesia, I&#8217;d also hate to be that mauled logger who was only trying to pay the bills.</p>
<p>Other prominent victims include the orangutan and pygmy elephant.  Both rely on the native forest habitat for survival, but the pygmy elephant has been specifically targeted because they <a title="Pygmy elephants and palm oil" href="http://asia.news.yahoo.com/090223/3/3ws1s.html" target="_blank">thrive on palm fruit</a>.  As you can imagine, that doesn&#8217;t make palm plantation owners too happy.</p>
<p>Orangutans are also frequently <a title="Orangutans and palm oil." href="http://news.bbc.co.uk/2/hi/uk_news/4273774.stm" target="_blank">cited as victims</a>, an assertion <a title="Orangutans not harmed by palm oil?!" href="http://www.americanpalmoil.com/pdf/enviromental/Press%20Statement%20-%20Orang%20Utan-BBC.pdf" target="_blank">flatly rejected</a> by the American Palm Oil Council, an association of palm oil developers, producers, refiners, etc&#8230;  But there is one glaring problem with the APOC&#8217;s arguments &#8211; they focus to absolve Malaysia producers of any wrongdoing.  But they fail to mention Indonesia at all in their counterpoint, the other very large palm oil producer.  I wonder why.</p>
<p>Which brings us to global warming.  One could argue that replacing forests with productive palm trees is at worst a carbon-neutral event.  Perhaps.  Yet it remains to be tested or demonstrated.  But <a title="Palm trees over Peat?" href="http://news.mongabay.com/2009/0215-indonesia.html" target="_blank">replacing native peatland with palm trees</a> almost certainly is not.  And unfortunately, the world will have to face the consequences of this as a result of the Indonesian government&#8217;s February 2009 decision to lift a ban to replace peatland with palm plantations.  Estimates of carbon released over the next few years as a result of this is&#8230;staggering.</p>
<p>Is there a silver lining anywhere in this story?!  Yes, well, maybe.  Whole Foods announced earlier this month that it will only sell palm oil obtained through sustainable means in its products starting in 2012.  Everything else will be banned.  Surely a bold move.  Though I can&#8217;t figure out why it will take three years to implement this ecologically-minded idea.</p>
<p>It should be as easy as saying, &#8220;Ok, I don&#8217;t want to buy any more of your palm oil, I&#8217;ll buy this other palm oil instead.&#8221;  Or, perhaps Whole Foods realizes the grim truth &#8211; doing the &#8220;right&#8221; thing is very hard.  Which in turn does not bode well for the average consumer: If Whole Foods is going to have a tough time telling which palm oil producer is good and which isn&#8217;t, how are <strong><em>we</em></strong> supposed to know?</p>
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		<title>Turtles Shell Helmets Courtesy of Sinking Ships</title>
		<link>http://www.tinysci.com/2009/02/23/turtles-shell-helmets-courtesy-of-sinking-ships/</link>
		<comments>http://www.tinysci.com/2009/02/23/turtles-shell-helmets-courtesy-of-sinking-ships/#comments</comments>
		<pubDate>Mon, 23 Feb 2009 15:23:45 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Business and Politics]]></category>
		<category><![CDATA[Engineering and Tech]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=384</guid>
		<description><![CDATA[The path to science discovery and application does not always follow a straight line.  This is one such example. For years the U.S. Navy has conducted tests of the explosive variety in an effort to make ships stronger and bombs more potent.  I can only assume they&#8217;re succeeding in doing a very good job at [...]]]></description>
			<content:encoded><![CDATA[<div id="attachment_386" class="wp-caption alignnone" style="width: 600px"><img class="size-medium wp-image-386" title="Turtles Shell Helmets Courtesy of Sinking Ships" src="http://www.tinysci.com/images/sinkex_fireball_navy-590x307.jpg" alt="USS Mullinnix as it's getting sunk as part of naval tests in August 1992.  Photo courtesy of USSMullinnix.org." width="590" height="307" /><p class="wp-caption-text">USS Mullinnix as it&#39;s getting sunk as part of naval tests in August 1992. Photo by USSMullinnix.org.</p></div>
<p>The path to science discovery and application does not always follow a straight line.  This is one such example.</p>
<p>For years the U.S. Navy has conducted tests of the explosive variety in an effort to make ships stronger and bombs more potent.  I can only assume they&#8217;re succeeding in doing a very good job at both.</p>
<p>But since these tests tend to take place over open water, there&#8217;s collateral damage of the marine variety.  In particular, dolphins and turtles.</p>
<p><span id="more-384"></span>Currently, the U.S. Navy takes measures to ensure that high-valued creatures such as these are a safe distance away from test sites before the bombs go off.  But the nagging question has always been &#8211; how far is far enough?</p>
<p>In order to answer that question, the U.S. Navy joined forces with scientists from the Woods Hole Oceanographic Institution.  Together they collected carcasses of turtles and dolphins which died of natural causes, embedded pressure sensors within them, and subjected them to underwater explosions from varying distances.</p>
<p>They found that while pressures of 300 pounds per square inch turned the insides of dolphins to mush, the same could not be said of turtles which recorded some but not significant internal damage.</p>
<p>They suspect the shell&#8217;s composition, shape, or some combination thereof helps protects turtles from these otherwise insane pressures.  Maybe it&#8217;s how the shell is basically an extension of the turtle&#8217;s ribcage.  To answer that question, further research is needed.  And if they find an answer, the hope would be to better improve the effectiveness of body armor and helmets.</p>
<p>You know, just in case you happen to be too close to an exploding ship.</p>
<p>Source: <a href="http://www.whoi.edu/oceanus/viewArticle.do?id=54786&amp;sectionid=1000" target="_blank">Woods Whole Oceanographic Institution</a></p>
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		<title>Coffee v. Strokes: Coffee Wins</title>
		<link>http://www.tinysci.com/2009/02/22/coffee-v-strokes-coffee-wins/</link>
		<comments>http://www.tinysci.com/2009/02/22/coffee-v-strokes-coffee-wins/#comments</comments>
		<pubDate>Mon, 23 Feb 2009 00:06:27 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Medicine]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=374</guid>
		<description><![CDATA[Doctor David Liebeskind of UCLA et al. announced late last week at the International Stroke Conference an interesting finding with regard to the relationship between coffee consumption and&#8230;wait for it&#8230;strokes. While previous publications have touted the seemingly beneficial effects of coffee drinking, how it relates to strokes was not established. But after looking at daily [...]]]></description>
			<content:encoded><![CDATA[<div id="attachment_377" class="wp-caption alignleft" style="width: 158px"><a href="http://www.tinysci.com/images/expresso.jpg"><img class="size-full wp-image-377" title="Coffee v. Strokes: Coffee Wins" src="http://www.tinysci.com/images/expresso.jpg" alt="Does coffee help prevent strokes?  Photo courtesy of Starbucks.com." width="148" height="225" /></a><p class="wp-caption-text">Does coffee help prevent strokes?  Photo courtesy of Starbucks.com.</p></div>
<p>Doctor David Liebeskind of UCLA et al. announced late last week at the International Stroke Conference an interesting finding with regard to the relationship between coffee consumption and&#8230;wait for it&#8230;strokes.</p>
<p>While previous publications have touted the seemingly beneficial effects of coffee drinking, how it relates to strokes was not established.</p>
<p>But after looking at daily coffee intake amongst a sample of over 30,000 individuals (of which, over 9,000 were coffee drinkers), they found lower incidences of strokes in those who drank more coffee.  In other words, those who imbibed at least 6 cups a day had fewer strokes than those who drank 3-5, who had fewer than those who drank 1-2, who had fewer than those who didn&#8217;t drink any.</p>
<p>If that wasn&#8217;t enough, the incidence of cardiac disease, diabetes, and hypertension was also lower for those who drank more coffee.</p>
<p>Right about now you might be asking why this is. Is coffee good for you? Should I drink more? The simple answer is, nobody knows.</p>
<p>Which implies that despite these findings, caution is in order.  The results represent correlations, not necessarily cause and effect.  The authors state that the mechanism behind these &#8220;benefits&#8221; is as yet unknown and more research is required.</p>
<p>For example, it is possible that those who drink a lot of coffee have greater wealth and thus better access to health care than those who drink less.  After all, last I checked 6 cafe mochas at Starbucks can easily set you back $20 a day. Which is about the cost of a very good PPO with a very good health insurance company here in California.</p>
<p>Source: <a title="International Stoke Conference Oral and Poster Presentations" href="http://stroke.ahajournals.org/cgi/reprint/STROKEAHA.108.000015v1.pdf" target="_blank">International Stroke Conference Oral and Poster Presentations</a></p>
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		<title>The $787 Billion Stimulus Package Gets Dissected</title>
		<link>http://www.tinysci.com/2009/02/19/the-787-billion-stimulus-package-gets-dissected/</link>
		<comments>http://www.tinysci.com/2009/02/19/the-787-billion-stimulus-package-gets-dissected/#comments</comments>
		<pubDate>Thu, 19 Feb 2009 16:59:27 +0000</pubDate>
		<dc:creator>Ramses Agustin</dc:creator>
				<category><![CDATA[Biology]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=359</guid>
		<description><![CDATA[Yesterday, Barack Obama signed the $787 billion stimulus package which narrowly passed the Senate just last week. And today, courtesy of The New England Journal of Medicine, we have a better idea of what that means to science and medicine. To get all the details, you should jump straight to the source. In a nutshell, [...]]]></description>
			<content:encoded><![CDATA[<p><img class="aligncenter" title="New England Journal of Medicine" src="http://content.nejm.org/icons/banner/v2_title_large.gif" alt="" width="482" height="95" />Yesterday, Barack Obama signed the $787 billion stimulus package which narrowly passed the Senate just last week. And today, courtesy of The New England Journal of Medicine, we have a better idea of what that means to science and medicine.</p>
<p>To get all the details, you should jump straight to the <a title="New England Journal of Medicine" href="http://content.nejm.org/cgi/content/full/NEJMp0900665" target="_blank">source</a>. In a nutshell, NIH funding increases by $10 billion, compared to a total budget of $29.5 billion last year. Plus, just over $1 billion will go to support various wellness programs and training for health professionals.</p>
<p>It’s clear that doctors and related scientists won’t be hurting any time soon, although the stimulus package mandates significant changes to the way doctors manage and safeguards patient information. But perhaps the biggest winner falls into an area you may have heard little about. Well, we suspect that will change shortly.</p>
<p><span id="more-359"></span></p>
<p>There is a branch of medical studies called comparative effectiveness research which recently received a nice bump, upwards of $1.1 billion in new funding. That’s over a 3x increase as compared to last year.</p>
<p>But what is comparative effectiveness research? Simply, the branch evaluates the risks and benefits of not just a particular drug, medical device, or surgical procedure but also those of competing or alternative treatments to determine their impact on the patient. As a simple example: Does aspirin work better than ibuprofen? What about naproxen sodium? Surprisingly, until recently no U.S. government or business entity existed to answer the question. But in today’s climate of ever-increasing health care costs, the question suddenly bears great relevance.</p>
<p>Source: <a href="http://content.nejm.org/cgi/content/full/NEJMp0900665" target="_blank">New England Journal of Medicine</a></p>
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		<title>Where&#8217;s Yo-Yo?</title>
		<link>http://www.tinysci.com/2009/01/27/wheres-yo-yo/</link>
		<comments>http://www.tinysci.com/2009/01/27/wheres-yo-yo/#comments</comments>
		<pubDate>Tue, 27 Jan 2009 18:50:56 +0000</pubDate>
		<dc:creator>Ramses Agustin</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Physics]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=303</guid>
		<description><![CDATA[This is what appears to be a blurry picture of the 2009 presidential innaguration.  In fact, it&#8217;s 220 images stitched together, taken with a Canon G10 and the Gigapan Imager by photographer David Bergman.  The Gigapan Imager is a robotic mount that moves a regular digital camera along  panoramic tracks while taking pictures along the [...]]]></description>
			<content:encoded><![CDATA[<div id="attachment_305" class="wp-caption alignnone" style="width: 600px"><a href="http://www.tinysci.com/images/inaguration.jpg"><img class="size-medium wp-image-305" title="Inaguration 2009 with Gigapan" src="http://www.tinysci.com/images/inaguration-590x248.jpg" alt="Inaguration 2009.  Photo by David Bergman." width="590" height="248" /></a><p class="wp-caption-text">Inauguration 2009. Can you find Yo-Yo Ma?  Photo by David Bergman.</p></div>
<p>This is what appears to be a blurry picture of the 2009 presidential innaguration.  In fact, it&#8217;s 220 images stitched together, taken with a Canon G10 and the <a title="Gigapan" href="http://www.gigapan.org/" target="_blank">Gigapan Imager</a> by photographer <a title="David Bergman Blog" href="http://www.davidbergman.net/blog/2009/01/22/how-i-made-a-1474-megapixel-photo-during-president-obamas-inaugural-address/" target="_blank">David Bergman</a>.  The Gigapan Imager is a robotic mount that moves a regular digital camera along  panoramic tracks while taking pictures along the way.  The result is what you see above &#8211; a very very very scaled down version of the final 1.47 <em>gigabyte </em>image.</p>
<div id="attachment_306" class="wp-caption alignleft" style="width: 250px"><a href="http://www.tinysci.com/images/yoyoma.jpg"><img class="size-thumbnail wp-image-306" title="Yo-Yo Ma at 2009" src="http://www.tinysci.com/images/yoyoma-240x176.jpg" alt="Yo-Yo Ma with iPhone" width="240" height="176" /></a><p class="wp-caption-text">Yo-Yo Ma with iPhone</p></div>
<p>While you can view and pan around this Gigapan image <a title="Gigapan Image of Obama" href="http://www.gigapan.org/viewGigapan.php?id=15374" target="_blank">here</a>, I&#8217;ve collected a list of some things I challenge you to find:</p>
<ol>
<li>President Obama (easy)</li>
<li>Teddy Kennedy</li>
<li>Tipper Gore</li>
<li>Yo-Yo Ma with iPhone</li>
<li>Newt Gingrich not paying attention</li>
<li>Snipers(?) on the Capital</li>
<li>Snipers on another building</li>
<li>Tents lined up in an unusual place</li>
</ol>
<p>Actually, I&#8217;ll show you what Yo-Yo Ma looks like.  What&#8217;s he doing?!  Good luck hunting!</p>
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		<title>A Trip to the La Jolla Tide Pools of San Diego</title>
		<link>http://www.tinysci.com/2009/01/25/la_jolla_tidepools/</link>
		<comments>http://www.tinysci.com/2009/01/25/la_jolla_tidepools/#comments</comments>
		<pubDate>Mon, 26 Jan 2009 06:35:10 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Featured Articles]]></category>
		<category><![CDATA[Travel]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=246</guid>
		<description><![CDATA[Nestled along the shores of La Jolla, California lie some of the best tide pools offered in San Diego.  While these can&#8217;t compete with the likes of what is found in Monterey Bay, the La Jolla tide pools are no more than a few minutes drive for most San Diegans, and their ease of accessibility [...]]]></description>
			<content:encoded><![CDATA[<div id="attachment_253" class="wp-caption alignnone" style="width: 600px"><a href="http://www.tinysci.com/images/img_1374.jpg"><img class="size-medium wp-image-253" title="La Jolla Tidepools" src="http://www.tinysci.com/images/img_1374-784x376.jpg" alt="La Jolla Tidepools at Sunset" width="590" height="282" /></a><p class="wp-caption-text">La Jolla tide pools at sunset in January 2009. Photo by Dave Oei.</p></div>
<div id="attachment_257" class="wp-caption alignleft" style="width: 164px"><a href="http://www.tinysci.com/images/img_1381.jpg"><img class="size-thumbnail wp-image-257" title="Curosity at the Tide Pool" src="http://www.tinysci.com/images/img_1381-240x320.jpg" alt="2 year Old Curiosity at the Tide Pool. Photo by Dave Oei." width="154" height="205" /></a><p class="wp-caption-text">2 year old curiosity at the tide pool. Photo by Dave Oei.</p></div>
<p>Nestled along the shores of La Jolla, California lie some of the best tide pools offered in San Diego.  While these can&#8217;t compete with the likes of what is found in Monterey Bay, the La Jolla tide pools are no more than a few minutes drive for most San Diegans, and their ease of accessibility makes visiting them well worth the while.  There&#8217;s an abundance of wildlife, including starfish, a variety of crustaceans, mollusks, and octopus.  And usually, without trying to hard, you&#8217;ll be able to spot seals and dolphins.</p>
<p>Did I mention that it&#8217;s gorgeous?</p>
<div id="attachment_258" class="wp-caption alignright" style="width: 250px"><a href="http://www.tinysci.com/images/img_1394.jpg"><img class="size-thumbnail wp-image-258" title="Starfish" src="http://www.tinysci.com/images/img_1394-240x122.jpg" alt="A Clump of Different Colored Starfish in La Jolla.  Photo by Dave Oei." width="240" height="122" /></a><p class="wp-caption-text">A clump of different colored starfish in La Jolla.  Photo by Dave Oei.</p></div>
<p>My family and I visited the pools a few weeks ago.  We arrived late in the afternoon when the tides were predicted to be quite low and we found ourselves shedding off the sweaters in the 70 degree weather.  That&#8217;s right: 70 degrees, by the beach, in January.  It really does happen in San Diego.</p>
<p>To go tide pooling, you&#8217;ll need to see to two pieces of logistics: Planning and Parking.</p>
<p><span id="more-246"></span>Planning is easy.  If you want to see the tide pools, you&#8217;ll have to go during low tide.  If you don&#8217;t have a tide predictor, there are online resources, such as the  <a title="La Jolla Tide Predictor" href="http://facs.scripps.edu/cgi-bin/plottide.pl" target="_blank">tide plotting tool</a> offered by the Scripps Research Institute.</p>
<p>Interpreting the plot is easy.  The vertical Y-axis will give you the tide height while the horizontal X-axis displays time.  You&#8217;ll want to visit when the tide is at least 0 feet or -1 feet to view the creatures best.  Once you&#8217;ve found what time low-tide corresponds to, plan on arriving at least an hour before that since it&#8217;s better to be situated early and let the tide roll out, instead of the other way around.</p>
<div id="attachment_275" class="wp-caption alignleft" style="width: 238px"><a href="http://www.tinysci.com/images/map.jpg"><img class="size-full wp-image-275" title="La Jolla Tidepools Parking" src="http://www.tinysci.com/images/map.jpg" alt="Tidepools Parking.  Courtesy of Google Maps." width="228" height="333" /></a><p class="wp-caption-text">Tide pool parking. From Google Maps.</p></div>
<p>Parking can get tricky.  The beach is beautiful (it <em>is </em>San Diego) and surfing is popular.  Most people probably park at Kellogg Park adjacent to La Jolla Shores beach.  But it&#8217;s almost a mile south of the tide pools and parking is iffy.  A better spot could be found at the intersection of: <a title="Google Map La Jolla Tidepools" href="http://maps.google.com/maps?f=q&amp;source=s_q&amp;hl=en&amp;geocode=&amp;q=8590+El+Paseo+Grande,+San+Diego,+CA&amp;sll=37.0625,-95.677068&amp;sspn=37.956457,67.851563&amp;ie=UTF8&amp;ll=32.864881,-117.25296&amp;spn=0.00492,0.008283&amp;t=h&amp;z=17" target="_blank">El Paseo Grande and La Jolla Shores</a>.</p>
<p>Actually, if you can find parking anywhere along El Paseo Grande you&#8217;re in good shape. And just west (left) of the &#8220;A&#8221; marker on the map, there&#8217;s a parking lot for those affiliated with UCSD.  But unless it&#8217;s a federal holiday (or you&#8217;re affiliated with UCSD), I wouldn&#8217;t chance it.</p>
<p>Once you park, make your way to the beach.  There&#8217;s access directly west from the &#8220;A&#8221; marker.  Or, if you parked further south, enjoy a leisurely stroll north up the beach.</p>
<p>The place you&#8217;re heading for is just north of Scripps Pier, pictured on the map.  It&#8217;s an easy hike &#8211; my 2 and 5 year old kids didn&#8217;t complain.  Much.</p>
<div id="attachment_255" class="wp-caption alignright" style="width: 250px"><a href="http://www.tinysci.com/images/img_1378.jpg"><img class="size-thumbnail wp-image-255" title="La Jolla Tidepools Rocky Outcroppings" src="http://www.tinysci.com/images/img_1378-240x180.jpg" alt="La Jolla Tidepools Rocky Outcroppings.  Photo by Dave Oei." width="240" height="180" /></a><p class="wp-caption-text">La Jolla tide pools rocky outcroppings.  Photo by Dave Oei.</p></div>
<p>Once at the tide pools you&#8217;ll be treated with several large sections of rocky outcroppings comprised of many small roundish and slippery boulders. Usually that spells disaster if you&#8217;re worried about little ones falling down.  But we found that using our bare feet worked best.  And, doing so had other benefits.</p>
<p>What I&#8217;m getting at is this sad fact: Walking along the tide pools results in destruction of tide pool habitat.  To get a great view of what&#8217;s going on, you have no choice but to destroy the homes and some creatures in the process.  It&#8217;s double-edge sword, like zoos.  But I digress.</p>
<p>Going barefoot helps.  First, you&#8217;ll have a better feel for where you&#8217;re stepping and will less likely walk onto an anemone.  And second, you&#8217;ll have a natural inclination to walk where others have already tread &#8211; minimizing additional damage to otherwise untouched areas.</p>
<p>There&#8217;s a lot to see and I suggest to explore it all.  Often you&#8217;ll see people congregate around one area &#8211; usually signifying a &#8220;major&#8221; discovery.  But the truth is, a lot of the most interesting creatures are spread out across the entire expanse and tend to stay hidden.  If you&#8217;re mindful, patient, and keep a keen eye, you can make your own discovery while keeping it a secret.</p>
<p>Which is what happened while peering at a lone starfish.  Our youngest son reached out and touched it&#8217;s hard, nubby surface, when out of nowhere a couple of foot-long arms reached out to investigate his fingers.  We were both initially startled, but immediately realized this was an octopus.  Sure enough, a few more legs emerged, but never the whole body.  We had this little guy all to ourselves.  And as the octopus explored it&#8217;s surroundings, we sat fascinated while I did my best to describe the intricacies of the creature.</p>
<div id="attachment_259" class="wp-caption alignleft" style="width: 250px"><a href="http://www.tinysci.com/images/img_1397.jpg"><img class="size-thumbnail wp-image-259" title="Muscles Everywhere at La Jolla Tidepools" src="http://www.tinysci.com/images/img_1397-240x169.jpg" alt="Muscles Everywhere.  Photo by Dave Oei." width="240" height="169" /></a><p class="wp-caption-text">Mussels everywhere.  Photo by Dave Oei.</p></div>
<p>If you&#8217;re lucky, you&#8217;ll also spot sea cucumbers and sea slugs.  Be careful if you touch them &#8211; they&#8217;re very delicate!</p>
<p>Other creatures are very plentiful.  Starfish are easy to find and are either loners or hand out in clumps.  We also found many little hermit crabs and even some odd-looking snails.</p>
<p>Plentiful too are the mussels and barnacles.  They&#8217;re not as sexy as the starfish or eight-armed bandits, but they&#8217;re role in the ecosystem is no less important. They&#8217;re filter feeders, and as a result help keep the waters clean.  And, mussels reside highest along the low-tide areas making them easy to see.  Of course, during low tide they&#8217;re clamped shut, but their numbers provide great visual interest often overlooked.</p>
<div id="attachment_260" class="wp-caption alignleft" style="width: 249px"><a href="http://www.tinysci.com/images/img_1412.jpg"><img class="size-thumbnail wp-image-260" title="Sea anemone at La Jolla Shores" src="http://www.tinysci.com/images/img_1412-239x165.jpg" alt="Sea anemone at La Jolla Shores.  Photo by Dave Oei" width="239" height="165" /></a><p class="wp-caption-text">Sea anemone at La Jolla Shores.  Photo by Dave Oei</p></div>
<p>Another creature hard to miss is the sea anemone.  When completely immersed in water they open up, tentacles spread out like these two pictured left.  They&#8217;re carnivorous but generally harmless to you and me.  If you gently touch a tentacle, you&#8217;ll feel a slight tug from their stinger, or nematocyst, which is what they use to capture prey.  Play with them too much and they&#8217;ll retreat, closing in on itself like a flower at sunset.</p>
<p>On the flip side, when anemone are out of water, they take special precautions to make sure they don&#8217;t dry in the warm San Diego sun. While these little guys don&#8217;t use sun screen, they instead make their own umbrellas. Out of sea shells!</p>
<div id="attachment_254" class="wp-caption alignright" style="width: 250px"><a href="http://www.tinysci.com/images/img_1375.jpg"><img class="size-thumbnail wp-image-254" title="Sea Anemone Exposed" src="http://www.tinysci.com/images/img_1375-240x246.jpg" alt="Sea Anemone Exposed. Photo by Dave Oei." width="240" height="246" /></a><p class="wp-caption-text">Sea anemone exposed. Photo by Dave Oei.</p></div>
<p>This is where you need to be very careful where you tread.  As you explore the tide pools you&#8217;ll see odd concentrations of seashells on the surface of some rocks.  It&#8217;s odd because seashells do not normally clump together &#8211; on the beach you&#8217;ll find them scattered throughout.</p>
<p>But if you&#8217;re look closely, you&#8217;ll notice that these shells are held in place by something not quite firm and not quite soft.  In fact, thousands of anemone are holding tight onto these shells to reflect the sun&#8217;s rays while maintaining their moisture.  Yet to the casual observer it&#8217;s just a bunch of shells.  So be sure if you see this to give the anemone a wide-berth and enjoy them from afar.</p>
<p>Our trip to the La Jolla tide pools ended just after a wonderful sunset as we were fortunate to visit the area with a low tide in the late afternoon.  But spurned by the neat experience and our kids&#8217; enthusiasm, we set out to find and others in San Diego.  In fact, the next day we visited one at Swami&#8217;s, just north of Cardiff by the Sea.  It&#8217;s geology is completely different.  And, I was pleasantly surprised to find that the native wildlife also different significantly.</p>
<p>But that&#8217;s another story.</p>
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		<title>Sugar Deal: Great for Everglades, Bad on Pocketbook?</title>
		<link>http://www.tinysci.com/2008/06/24/sugar-deal-great-for-everglades-bad-on-pocketbook/</link>
		<comments>http://www.tinysci.com/2008/06/24/sugar-deal-great-for-everglades-bad-on-pocketbook/#comments</comments>
		<pubDate>Wed, 25 Jun 2008 00:00:09 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=194</guid>
		<description><![CDATA[In what&#8217;s billed to be the largest land restoration and buyback in US History, Florida is purchasing 187,000 acres from US Sugar Corp which will eventually be rehabilitated to it&#8217;s natural Everglades habitat.  Doing so will help mitigate against future flooding and remove the need for some existing dams.  While making for some nice alligator, [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://www.tinysci.com/images/greategret.jpg"><img class="left" title="Great Egret from Everglades" src="http://www.tinysci.com/images/greategret-240x160.jpg" alt="" width="240" height="160" /></a>In what&#8217;s billed to be the largest land restoration and buyback in US History, Florida is purchasing 187,000 acres from US Sugar Corp which will eventually be rehabilitated to it&#8217;s natural Everglades habitat.  Doing so will help mitigate against future flooding and remove the need for some existing dams.  While making for some nice alligator, fish, and great egret homes.  Overall, it&#8217;s great news for the ecology of the Everglades and all the wildlife that exist in the region.</p>
<p>But, there ain&#8217;t no such thing as a free lunch.  With corn and corn-related products at an all time high due to soaring food demand and the likes of ethanol, this Everglades deal will no doubt exasperate the corn pricing problem.  You see, US Sugar is currently producing about 10% of our current consumption of sugar.  Which means that either current surgar consumers will have to find other sources of sugar or switch to an alternative.</p>
<p><span id="more-194"></span></p>
<p>Well, just over 20 years ago most carbonated beverage makers made the switch to high-fructose corn syrup.  That was due to high tariffs on imported sugar and subsidies to corn farmers, which drove down corn prices while maintaining artificially high sugar prices.  But with corn already in very high demand and the sugar lobby still very protectionist, I figure Joe Consumer will have a lot to cry about once the Everglades deal goes through.</p>
<p>Don&#8217;t get me wrong.  Getting the Everglades back is qualatitively a very &#8220;good&#8221; thing.  But, by setting aside comprehensive planning and exploring potential impacts of this deal, the politicians involved may have just taken a draw from your pocketbook without you knowing.</p>
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		<title>Coaxing HIV Out of Hiding with Clever Engineering</title>
		<link>http://www.tinysci.com/2008/05/08/coaxing-hiv-out-of-hiding-with-clever-engineering/</link>
		<comments>http://www.tinysci.com/2008/05/08/coaxing-hiv-out-of-hiding-with-clever-engineering/#comments</comments>
		<pubDate>Thu, 08 May 2008 14:45:35 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Chemistry]]></category>
		<category><![CDATA[Medicine]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=182</guid>
		<description><![CDATA[When it comes to combating HIV, doctors and scientists have an arsenal of drugs and regimens to choose from. Unfortunately, none are 100% effective because of the one sinister trait of HIV &#8211; it&#8217;s ability to hide and lay dormant in T-cells for years or decades. Which is why flushing HIV out of T-cells has [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://www.tinysci.com/images/hiv-and-tcell.jpg"><img class="left" title="HIV_TCell" src="http://www.tinysci.com/images/hiv-and-tcell-240x358.jpg" alt="" width="240" height="358" /></a> When it comes to combating HIV, doctors and scientists have an arsenal of drugs and regimens to choose from. Unfortunately, none are 100% effective because of the one sinister trait of HIV &#8211; it&#8217;s ability to hide and lay dormant in T-cells for years or decades.</p>
<p>Which is why flushing HIV out of T-cells has been on the forefront of medical science for years.  Through experimentation it&#8217;s been shown that two naturally occurring plant compounds, Prostratin and DPP, in combination with other drugs are able to push HIV out of T-cells with about 80% efficacy.  Sure, it&#8217;s not 100%, but experimentation had been hampered by the availability of these compounds.</p>
<p>They come from scarcely found plants from far away places and produce variable yet meager quantities of these valuable compounds.  In other words, they must be extremely expensive and hard to come by.</p>
<p>Fortunately, there are real people out there who actually performed very well in Organic Chemistry.  And it is they who come to this story&#8217;s rescue.</p>
<p><span id="more-182"></span></p>
<p>Stanford chemist Paul Wender and his fellow colleagues were able to devise a method to create prostratin and DPP in the laboratory, using nothing but materials that are easy to obtain in a method that is sustainable.  To top it off, they detail the process of its creation and hint at areas in the process where the compounds may be tweaked or grossly modified to potentially produce the 100% effective HIV flusher.</p>
<p>So if you ever wondered where your studies of aromatic hydrocarbons were going, this is a great example of a noble cause.</p>
<p>And with over 30 million people in the world living with HIV today, let&#8217;s hope they (and possibly you) get to a solution soon.</p>
<p>Source: <a href="http://news-service.stanford.edu/news/2008/may7/samoahiv-050708.html" target="_blank">Stanford</a><br />
Photo: <a href="http://www.aids-info.ch/e_te/aas-e-imm.htm" target="_blank">AIDS Information, Switzerland</a></p>
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		<title>There&#8217;s Singing in the Brain</title>
		<link>http://www.tinysci.com/2008/05/05/theres-singing-in-the-brain/</link>
		<comments>http://www.tinysci.com/2008/05/05/theres-singing-in-the-brain/#comments</comments>
		<pubDate>Mon, 05 May 2008 16:00:38 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=173</guid>
		<description><![CDATA[Just like babies, juvenile birds babble incessantly and practice their songs before getting it just right.  But how does that transition happen?  Are there two pathways to song (and, possibly speech) development, or just one that matures over time? The folks at Fee lab at MIT were on the case. Their subjects: zebra finches.  Which [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://www.tinysci.com/images/zebrabirds.jpg"><img class="left" title="Zebra Finches Babble" src="http://www.tinysci.com/images/zebrabirds-240x174.jpg" alt="" width="240" height="174" /></a> Just like babies, juvenile birds babble incessantly and practice their songs before getting it just right.  But how does that transition happen?  Are there two pathways to song (and, possibly speech) development, or just one that matures over time?</p>
<p>The folks at Fee lab at MIT were on the case.</p>
<p><span id="more-173"></span></p>
<p>Their subjects: zebra finches.  Which reminds me of why I never pursued an advanced degree in biochemistry.  It wasn&#8217;t until the last year of biochemistry, specifically during biochem lab, that we started experimenting with mice.  I&#8217;m not sure why it never occurred to me that the vast majority of biochemistry research was done with animals, but it certainly brought the issue to focus right then and there.  And while I commend the people (and lab animals) that operate under long hours with no guarantee of success, I found it&#8217;s not something I can do.  Which is why I fell into computing.  And marketing.</p>
<p>But I digress.</p>
<p>Yes, zebra finches.  They&#8217;re small, cute, and must be easy to work with.  Because somehow these scientists at MIT were able to disable parts of their brains, only temporarily mind you!, to discover that there existed two pathways toward song development.  Rather than a single pathway that slowly matured with age, there were two, and the adult-controlled motor cortex simply took over the other once the babble turned into a finely crafted song.  But for these birds, it appears that one song&#8217;s all they ever really need.</p>
<p>Interestingly, once the finch&#8217;s motor cortex took over, the song then never changed or varied.  Which implies an inability to learn.  But with the motor cortex temporarily disabled in adults, the juvenile pathway kicks in and the babbling returns.  Which marks a great difference between birds an us &#8211; we for the most part can continue to learn and adapt our speech and language over a lifetime.</p>
<p>Source: <a href="http://web.mit.edu/newsoffice/2008/birdsongs-0501.html" target="_blank">MIT</a><br />
Photo: <a href="http://web.mit.edu/~aronov/www/babbling/birds.jpg" target="_blank">Aaron Andalman at Fee Lab</a></p>
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		<title>Alzheimer&#8217;s Reversed in Mice?</title>
		<link>http://www.tinysci.com/2008/05/04/alzheimers-reversed-in-mice/</link>
		<comments>http://www.tinysci.com/2008/05/04/alzheimers-reversed-in-mice/#comments</comments>
		<pubDate>Sun, 04 May 2008 20:26:10 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=169</guid>
		<description><![CDATA[The bad guy?  In this case, nicotinamide adenine dinucleotide phosphate-oxidase, or NADPH for short.  We have it, and so do mice.  For a living, it resides in neutrophils (bacteria/fungi eating white blood cells)  and creates superoxides that destroy foreign pathogens.  That is, unless they go out of wack, in which case they apparently feast on [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://www.tinysci.com/images/mightymouse.jpg"><img class="left" title="mightymouse" src="http://www.tinysci.com/images/mightymouse-239x233.jpg" alt="" width="239" height="233" /></a></p>
<p>The bad guy?  In this case, nicotinamide adenine dinucleotide phosphate-oxidase, or NADPH for short.  We have it, and so do mice.  For a living, it resides in neutrophils (bacteria/fungi eating white blood cells)  and creates superoxides that destroy foreign pathogens.  That is, unless they go out of wack, in which case they apparently feast on something a bit closer to home: Your brain.</p>
<p><span id="more-169"></span></p>
<p>Folks in Cornell studied the role of NADPH in mice suffering from an Alzheimer&#8217;s analog and found that when this enzyme was switched off, the mice were able to regain some functions lost as a result of their disease.  Slices of their brains showed that turning off NADPH had no effect on decreasing the size of brain plaques, rather, it simply halted the progression of the disease.</p>
<p>And, since the role of NADPH is to create these superoxide free radicals, these scientists speculate that the use of brain-targeted antioxidants may the an answer to if Alzheimer&#8217;s kicks in.  Seems like a good start, but it also sounds like the have a ways to go.</p>
<p>Source: <a href="http://www.news.cornell.edu/stories/April08/wcmc.antioxidant.alz.html" target="_self">Cornell</a></p>
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		<title>May the Biggest Fish Win?</title>
		<link>http://www.tinysci.com/2008/04/17/may-the-biggest-fish-win/</link>
		<comments>http://www.tinysci.com/2008/04/17/may-the-biggest-fish-win/#comments</comments>
		<pubDate>Fri, 18 Apr 2008 06:22:42 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/?p=147</guid>
		<description><![CDATA[Only smaller game fish need worry if recent findings on size-targeted fishing from Scripps&#8217; scientists are on the money. They examined the the effects of fishing regulations specifying the throw back of smaller fish on ecological stabilization and species population dynamics. If you don&#8217;t fish, you may not be aware that for many game fish [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://www.tinysci.com/images/findingnemo.jpg"><img class="left" title="Finding Nemo" src="http://www.tinysci.com/images/findingnemo-239x207.jpg" alt="May the Big Fish Win?" width="239" height="207" /></a> Only smaller game fish need worry if recent findings on size-targeted fishing from Scripps&#8217; scientists are on the money.  They examined the the effects of fishing regulations specifying the throw back of smaller fish on ecological stabilization and species population dynamics.</p>
<p>If you don&#8217;t fish, you may not be aware that for many game fish species only those that exceed a certain size may be kept while the remainder are thrown back.  For example, in California there is a 10 inch minimum on bocaccio, a type of rockfish.  Any smaller and they&#8217;re free.  Larger ones go in the BBQ.</p>
<p>What the folks at Scripps found was that taking only the larger, and presumably older and mature fish had highly destabilizing effects on fish species populations and the overall area ecology.  Thus, they advocate to instead leave behind the older fish as they tend to eat less, help maintain the population pyramid, and produce more viable young.</p>
<p>Sounds good to me since what&#8217;s implied is that an overall balanced ecosystem should also improve yields in the long term.  For now, we&#8217;ll see how long it takes lawmakers to make the change, but don&#8217;t expect the fishing lobby to go down without a fight.</p>
<p>Source: <a href="http://scrippsnews.ucsd.edu/Releases/?releaseID=896ses/?releaseID=896" target="_blank">Scripps Institute of Oceanography</a><br />
Photo: Finding Nemo @ <a title="Finding Nemo" href="http://disny.go.com" target="_blank">Disney</a></p>
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		<title>Scripps to Name New Species After TinySci!</title>
		<link>http://www.tinysci.com/2008/04/10/scripps-to-name-new-species-after-tinysci/</link>
		<comments>http://www.tinysci.com/2008/04/10/scripps-to-name-new-species-after-tinysci/#comments</comments>
		<pubDate>Thu, 10 Apr 2008 15:30:14 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/2008/04/10/scripps-to-name-new-species-after-tinysci/</guid>
		<description><![CDATA[Sigh. If only it were true. Folks over at the Scripps Institute of Oceanography in San Diego are presenting donors with an opportunity verging on immortality. They (meaning possibly you) can have their name live in perpetuity by making a sizable donation to the Institute, and in return receive naming (and bragging) rights for a [...]]]></description>
			<content:encoded><![CDATA[<p><img src="http://www.tinysci.com/images/lajollanew.jpg" alt="This is an erâ€¦ erâ€¦" /></p>
<p>Sigh.  If only it were true.</p>
<p>Folks over at the Scripps Institute of Oceanography in San Diego are presenting donors with an opportunity verging on immortality.  They (meaning possibly you) can have their name live in perpetuity by making a sizable donation to the Institute, and in return receive naming (and bragging) rights for a number of newly found ultra-cool-looking critters.<span id="more-133"></span></p>
<p>Like this guy above, the&#8230;.thing-a-ma-gig.  Or, if you&#8217;re feeling generous, you could name a sea creature after your favorite science blog.</p>
<p>I think vermiaquaticus tinyscium has a nice ring, don&#8217;t you?  It&#8217;s certainly better than billius gatesium.</p>
<p>Because of the high demand, don&#8217;t bother bothering them unless you can fork over at least $5k, with the primo unnamed creatures setting you back a cool $50k.</p>
<p>Do you have name ideas?  Send them in a comment below and I&#8217;ll forward the lot to Scripps.</p>
<p>Source: <a href="http://scrippsnews.ucsd.edu/Releases/?releaseID=894" target="_blank">Scripps Institute of Oceanography</a></p>
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		<title>Ingenious Algae, Al Gore&#8217;s Nemesis?</title>
		<link>http://www.tinysci.com/2008/04/09/ingenious-algae-al-gores-nemesis/</link>
		<comments>http://www.tinysci.com/2008/04/09/ingenious-algae-al-gores-nemesis/#comments</comments>
		<pubDate>Wed, 09 Apr 2008 16:00:14 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Global Science]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/2008/04/09/ingenious-algae-al-gores-nemesis/</guid>
		<description><![CDATA[It was once believed that this tiny, yet extremely pervasive blue-green algae, or cyanobacteria (specifically, Synechococcus) helped moderate the increase in carbon dioxide emissions as it underwent photosynthesis across the world&#8217;s oceans. While generally true, scientists at Stanford and the Carnegie Institution noticed something odd while working with these critters in the lab &#8211; the [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://www.tinysci.com/2008/04/09/ingenious-algae-al-gores-nemesis/synechococcus-aka-blue-green-algae-aka-cyanobacteria/" rel="attachment wp-att-127" title="Synechococcus, aka Blue-Green Algae, aka Cyanobacteria"><img src="http://www.tinysci.com/images/synechococcus.jpg" alt="Synechococcus, aka Blue-Green Algae, aka Cyanobacteria" class="left" /></a> It was once believed that this tiny, yet extremely pervasive blue-green algae, or cyanobacteria (specifically, <em>Synechococcus</em>) helped moderate the increase in carbon dioxide emissions as it underwent photosynthesis across the world&#8217;s oceans.  While generally true, scientists at Stanford and the Carnegie Institution noticed something odd while working with these critters in the lab &#8211; the amount of photosynthesis activity measured didn&#8217;t match the amount of carbon dioxide being consumed.</p>
<p>Uh oh.</p>
<p><span id="more-126"></span>Instead,  it turns out <em>Synechococcus</em> developed a method for bypassing the carbon-fixing step of photosynthesis, which it utilizes in areas of the ocean which are iron deficient.  Unfortunately, that includes a rather large chunk of ocean.  And when <em>Synechococcus</em> uses this no-carbon-fixing pathway, it means carbon dioxide is not getting removed from the atmosphere as quickly as Al Gore (or nearly anybody else) would like.</p>
<p>And, whereas previously scientists estimated cyanobacteria carbon dioxide uptake by simply analyzing satellite imagery and measuring chlorophyll concentrations, they&#8217;ll now have to take into account levels of nutrients as well.  And I&#8217;m not sure how you do that with satelites.</p>
<p>Yikes, it looks like someone&#8217;s job just got a bit harder.  And, an even better reason to trade in for a Prius. Wait, oh yeah, one more pathway to learn in Bio 1A and Biochem 126.</p>
<p>Source: <a href="http://news-service.stanford.edu/news/2008/april2/plant-040208.html" title="Stanford, Phytoplankton species deviates from norm: No CO2 absorbed in photosynthesis" target="_blank">Stanford </a></p>
<p>Photo: <a href="http://www.lbl.gov/Science-Articles/Archive/JGI-microbe-clues.html" title="Lawrence Berkeley National Laboratory" target="_blank">Lawrence Berkeley National Laboratory</a></p>
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		<title>New Anglerfish Found off Ambom Island, Indonesia</title>
		<link>http://www.tinysci.com/2008/04/02/new-anglerfish-found-off-ambom-island-indonesia/</link>
		<comments>http://www.tinysci.com/2008/04/02/new-anglerfish-found-off-ambom-island-indonesia/#comments</comments>
		<pubDate>Wed, 02 Apr 2008 19:52:16 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/2008/04/02/new-anglerfish-found-off-ambom-island-indonesia/</guid>
		<description><![CDATA[What swims, has binocular vision, leg-like appendages, and can squeeze into the smallest of spaces with ease? This guy can, a newly discovered species of anglerfish which is so unique that scientists speculate it may belong to a new family of fish, which in itself is somewhat rare with only 5 new fish families having [...]]]></description>
			<content:encoded><![CDATA[<p><img src="http://www.tinysci.com/images/frogfish.jpg" alt="New Frogfish from Ambon Island in Indonesia" class="left" />What swims, has binocular vision, leg-like appendages, and can squeeze into the smallest of spaces with ease?  This guy can, a newly discovered species of anglerfish which is so unique that scientists speculate it may belong to a new family of fish, which in itself is somewhat rare with only 5 new fish families having been added to our general taxonomy in the last 50 years.  Though anglerfish in general are not uncommon, any fish with front-mounted eyeballs generally are, implying that these little dudes may see the way we do.</p>
<p>Source: <a href="http://uwnews.org/article.asp?articleID=40737" target="_blank">University of Washington</a><br />
Photo: M. Snyder, starknakedfish.com / divingmaluku.com</p>
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		<title>Human-Animal Hybrid Makes Waves in the UK</title>
		<link>http://www.tinysci.com/2008/04/01/human-animal-hybrid-makes-waves-in-the-uk/</link>
		<comments>http://www.tinysci.com/2008/04/01/human-animal-hybrid-makes-waves-in-the-uk/#comments</comments>
		<pubDate>Wed, 02 Apr 2008 05:25:37 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/2008/04/01/human-animal-hybrid-makes-waves-in-the-uk/</guid>
		<description><![CDATA[Researchers in the UK beat the bullet and managed to grow human &#8211; cow hybrid embryos which lived for three days in a tube before dying. The researchers are not happy because they were shootin&#8217; for six days. The Pope&#8217;s upset, though I&#8217;m not sure why. Look, worse case, we have werewolves and vampires rummaging [...]]]></description>
			<content:encoded><![CDATA[<p><a href="http://www.tinysci.com/2008/04/01/human-animal-hybrid-makes-waves-in-the-uk/splash-with-daryl-hannah/" rel="attachment wp-att-107" title="Splash with Daryl Hannah"><img src="http://www.tinysci.com/images/splash.jpg" alt="Splash with Daryl Hannah" class="left" /></a> Researchers in the UK beat the bullet and managed to grow human &#8211; cow hybrid embryos which lived for three days in a tube before dying.  The researchers are not happy because they were shootin&#8217; for six days.  The Pope&#8217;s upset, though I&#8217;m not sure why.  Look, worse case, we have werewolves and vampires rummaging through my trash at night.  At best, Daryl Hannah shows up, except not the actress, but a mermaid.  It could be worse, right?</p>
<p>Source: <a href="http://news.bbc.co.uk/2/hi/health/7323298.stm" title="Human-Animal Hybrid Embryos">BBC</a></p>
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		<title>Pangolin Soup, Served with Tiger Penis, Rhino Horn&#8230;</title>
		<link>http://www.tinysci.com/2007/11/12/pangolin-soup-served-with-tiger-penis-rhino-horn/</link>
		<comments>http://www.tinysci.com/2007/11/12/pangolin-soup-served-with-tiger-penis-rhino-horn/#comments</comments>
		<pubDate>Mon, 12 Nov 2007 17:23:34 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Endangered Species]]></category>
		<category><![CDATA[Pangolin]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/2007/11/12/pangolin-soup-served-with-tiger-penis-rhino-horn/</guid>
		<description><![CDATA[What&#8217;s this scaly cute mammal hanging here on the left? It&#8217;s a pangolin. I didn&#8217;t learn about these critters until I saw them in one of my kid&#8217;s favorite books: &#8220;Tails&#8220;. The next time they came to mind was yesterday when I found that some Chinese turn these guys into soup. Taste just like chicken? [...]]]></description>
			<content:encoded><![CDATA[<p><img src="http://www.tinysci.com/images/pangolin.jpg" alt="Pangolin" class="left" />What&#8217;s this scaly cute mammal hanging here on the left?  It&#8217;s a pangolin. I didn&#8217;t learn about these critters until I saw them in one of my kid&#8217;s favorite books: &#8220;<a type="amzn" asin="0152167730">Tails</a>&#8220;.  The next time they came to mind was yesterday when I found that some Chinese turn these guys into <a href="http://news.yahoo.com/s/afp/20071110/sc_afp/thailandindonesiamalaysiachinawildlife" target="_blank">soup</a>.  Taste just like chicken?  Who knows.  One thing&#8217;s for sure, they&#8217;re certainly not as plentful.  </p>
<p><img src="http://www.tinysci.com/images/tiger.jpg" alt="Tiger" class="left" />It&#8217;s hard to be surprised.  For thousands of years the Chinese have used/eaten just about anything in the name of herbal remedies.  Not that there&#8217;s anything wrong with that.  That is, unless you ask Tiger what they do to his bones.  Or worse, his penis.  Then there&#8217;s Rhino whose horn of fingernail-cartilage is driving it to extinction.  Supposedly those practices are on the decline, which is great, but considering we&#8217;re still receiving news of this type, who really knows?</p>
<p><img src="http://www.tinysci.com/images/rhino.jpg" alt="Rhino" class="left" />It&#8217;s a shame, really, that the 20th century hasn&#8217;t delivered on the promise of providing a solid science background and a healthy dose of skepticism to the next generation in an effort to help eradicate mysticism and  unsubstantiated health claims.  It&#8217;s not just the minds of tomorrow that are suffering &#8211; don&#8217;t be surprised if your kids&#8217; only exposure to these creatures is some backwater blog.</p>
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		<title>Elephant Walk and Kissin&#8217; Up to Mama</title>
		<link>http://www.tinysci.com/2007/10/30/elephant-walk-and-kissin-up-to-mama/</link>
		<comments>http://www.tinysci.com/2007/10/30/elephant-walk-and-kissin-up-to-mama/#comments</comments>
		<pubDate>Tue, 30 Oct 2007 16:28:49 +0000</pubDate>
		<dc:creator>Dave Oei</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[Elephants]]></category>

		<guid isPermaLink="false">http://www.tinysci.com/2007/10/30/elephant-walk-and-kissin-up-to-mama/</guid>
		<description><![CDATA[Ecologists in Berkeley teamed with researchers from Save the Elephants and discovered that those elephants which herd with dominant matriarchs traveled significantly less for food when resources were scarce. I guess sometimes it is about who you know.Source: Berkeley]]></description>
			<content:encoded><![CDATA[<p><img src="http://www.tinysci.com/images/elephant.jpg" class="left" alt="Elephant Walk" />Ecologists in Berkeley teamed with researchers from Save the Elephants and discovered that those elephants which herd with dominant matriarchs traveled significantly less for food when resources were scarce.  I guess sometimes it is about who you know.<br />Source: <a href="http://www.berkeley.edu/news/media/releases/2007/10/29_elephants.shtml" target="_blank">Berkeley</a></p>
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